Info • Daldinia grandis CBS 114736 v1.0

Status

[March 2019] The Daldinia grandis CBS 114736 genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page

Summary statistics for the Daldinia grandis CBS 114736 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.51
Sequencing read coverage depth 257.6x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 6
Scaffold L50 (Mbp) 2.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.75, 3.55, 3.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45052 43960 97.6%
Ests est.fasta 233643083 232309435 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2036 1814
transcript 1863 1653
exon 622 388
intron 88 66
description:
protein length (aa) 487 410
exons per gene 3.00 3
# of gene models 10546


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.