Info • Daldinia loculata AZ0526 v1.0

Status

[March 2019] This genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Daldinia loculata AZ0526 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.67
Sequencing read coverage depth 319.79x
# of contigs 121
# of scaffolds 121
# of scaffolds >= 2Kbp 121
Scaffold N50 15
Scaffold L50 (Mbp) 0.76
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.16, 1.82, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46413 45388 97.8%
Ests est.fasta 214109405 212671983 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2014 1788
transcript 1845 1639
exon 617 385
intron 87 65
description:
protein length (aa) 482 404
exons per gene 2.99 3
# of gene models 10824


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.