Info • Daldinia loculata AZ0526 v2.0

Status

[January 2020] The Daldinia loculata AZ0526 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia loculata AZ0526 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.62
Sequencing read coverage depth 227.27x
# of contigs 128
# of scaffolds 128
# of scaffolds >= 2Kbp 128
Scaffold N50 21
Scaffold L50 (Mbp) 0.51
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.16, 1.51, 1.02


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46413 45426 97.9%
Ests est.fasta 214109405 212473874 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2015 1793
transcript 1845 1639
exon 618 385
intron 88 65
description:
protein length (aa) 481 404
exons per gene 2.99 3
# of gene models 10820


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.