Info • Daldinia vernicosa CBS 139.73 v1.0

Status

[March 2019] The Daldinia vernicosa CBS 139.73 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Daldinia vernicosa CBS 139.73 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.84
Sequencing read coverage depth 164.60830555x
# of contigs 285
# of scaffolds 275
# of scaffolds >= 2Kbp 219
Scaffold N50 22
Scaffold L50 (Mbp) 0.55
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.38, 1.26, 1.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36973 33399 90.3%
Ests est.fasta 94601692 92441748 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2003 1765
transcript 1838 1605
exon 623 389
intron 87 65
description:
protein length (aa) 490 411
exons per gene 2.95 2
# of gene models 10674


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.