Status
The Debaryomyces singareniensis CBS 10405 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were provided by John Wolters on Nov 24, 2021. Please note that this copy of the genome is not maintained by John and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 10.10 |
Sequencing read coverage depth | Unknown |
# of contigs | 145 |
# of scaffolds | 143 |
# of scaffolds >= 2Kbp | 77 |
Scaffold N50 | 13 |
Scaffold L50 (Mbp) | 0.30 |
# of gaps | 2 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.60, 0.48, 0.44 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1495 | 1254 |
transcript | 1482 | 1245 |
exon | 1333 | 1116 |
intron | 111 | 66 |
description: | ||
protein length (aa) | 494 | 415 |
exons per gene | 1.11 | 1 |
# of gene models | 5418 |
Collaborators
- Chris T. Hittinger, UW-Madison.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Debaryomycetaceae
Funding
This project was not sequenced at the JGI.