Info • Delitschia confertaspora ATCC 74209 v1.0

Status

 June 2014. The genome of Delitschia confertaspora was sequenced using Illumina technology and assembled using AllPathsLG release version R46652 (Gnerre et al., 2011).

Summary statistics for the Delitschia confertaspora ATCC 74209 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.16
Sequencing read coverage depth 143x
# of contigs 822
# of scaffolds 764
# of scaffolds >= 2Kbp 729
Scaffold N50 147
Scaffold L50 (Mbp) 0.07
# of gaps 58
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.27, 0.24, 0.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 22687 22147 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1766 1530
transcript 1603 1377
exon 548 336
intron 86 58
description:
protein length (aa) 455 374
exons per gene 2.93 3
# of gene models 10171


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.