Info • Delphinella strobiligena CBS 735.71 v1.0

Status

[October 2016] The Delphinella strobiligena CBS 735.71 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Delphinella strobiligena v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.21
Sequencing read coverage depth 188.61x
# of contigs 17
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 6
Scaffold L50 (Mbp) 2.26
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.88, 2.79, 2.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27344 26266 96.1%
Ests est.fasta 98044857 84286004 86.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1687 1463
transcript 1554 1332
exon 573 337
intron 79 58
description:
protein length (aa) 454 375
exons per gene 2.71 2
# of gene models 10337


Collaborators

Jon Magnuson at the Pacific Northwest National Laboratory

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.