Info • Dendrothele bispora CBS 962.96 v1.0


[Dec 2013] The Dendrothele bispora genome was sequenced using Illumina HiSeq and PacBio reads.  Illumina sequences were assembled using AllPathsLG, and gaps were subsequently closed by PacBio sequences using PBJelly.

Summary statistics for the Dendrothele bispora CBS 962.96 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 130.65
Sequencing read coverage depth 103x
# of contigs 6351
# of scaffolds 3942
# of scaffolds >= 2Kbp 2906
Scaffold N50 302
Scaffold L50 (Mbp) 0.12
# of gaps 2409
% of scaffold length in gaps 3.6%
Three largest Scaffolds (Mbp) 1.60, 0.90, 0.72

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 48157 44260 91.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1556 1227
transcript 1162 915
exon 228 141
intron 98 61
protein length (aa) 356 275
exons per gene 5.09 4
# of gene models 33645


Joseph Spatafora, Oregon State University, USA
David Hibbett and Laszlo Nagy at Clark University, Worcester, MA.

Genome Reference(s)



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.