Info • Dendrothele microspora FP 101998 v1.0


[September 2018] The Dendrothele microspora FP 101998 genome was sequenced using the Illumina platform, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dendrothele microspora v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.66
Sequencing read coverage depth 137.95572182x
# of contigs 1106
# of scaffolds 971
# of scaffolds >= 2Kbp 692
Scaffold N50 67
Scaffold L50 (Mbp) 0.16
# of gaps 135
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.42, 1.21, 1.00

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65830 62266 94.6%
Ests est.fasta 186447563 182408588 97.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1827 1601
transcript 1506 1312
exon 237 143
intron 62 54
protein length (aa) 437 362
exons per gene 6.36 5
# of gene models 17356


Jon Magnuson, Pacific Northwest National Laboratory, USA

Daniel Lindner, US Forest Service, Northern Research Station, USA

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.