Info • Diaporthaceae sp. PMI_573 v1.0

Status

[July 2019] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Diaporthaceae sp. PMI_573 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 83.86
Sequencing read coverage depth 60.23x
# of contigs 238
# of scaffolds 238
# of scaffolds >= 2Kbp 236
Scaffold N50 26
Scaffold L50 (Mbp) 0.92
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.12, 3.82, 2.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65639 60806 92.6%
Ests est.fasta 83841182 82719447 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1663 1448
transcript 1488 1289
exon 557 359
intron 107 72
description:
protein length (aa) 426 354
exons per gene 2.67 2
# of gene models 22973


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.