BLAST function on our site is limited to a single organism due to maintenance activity on our computational cluster.
Info • Diatrype disciformis NRRL 26140 v1.0

Status

[August 2021] The Diatrype disciformis NRRL 26140 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 70.73
Sequencing read coverage depth 32.34x
# of contigs 10
# of scaffolds 10
# of scaffolds >= 2Kbp 10
Scaffold N50 3
Scaffold L50 (Mbp) 8.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 15.74, 11.23, 8.83


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29326 27690 94.4%
Ests est.fasta 120506270 111666112 92.7%


Gene Models FilteredModels2
length (bp) of: average median
gene 1886 1664
transcript 1664 1458
exon 534 315
intron 107 72
description:
protein length (aa) 476 401
exons per gene 3.12 3
# of gene models 13319


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.