Info • Diaporthe inconspicua LGMF1612 v1.0

Status

[September 2023] The Diaporthe inconspicua LGMF1612 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 56.26
Sequencing read coverage depth 28.85x
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 4
Scaffold L50 (Mbp) 5.57
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 12.40, 6.19, 5.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38660 36859 95.3%
Ests est.fasta 80411353 79454468 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1879 1643
transcript 1692 1476
exon 598 378
intron 104 72
description:
protein length (aa) 488 413
exons per gene 2.83 2
# of gene models 17139


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.