Info • Dichotomocladium elegans RSA 919- v1.0

Status

[May 2017] The Dichotomocladium elegans RSA 919- genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dichotomocladium elegans RSA 919- v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.78
Sequencing read coverage depth 105.83x
# of contigs 185
# of scaffolds 185
# of scaffolds >= 2Kbp 177
Scaffold N50 13
Scaffold L50 (Mbp) 1.06
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.43, 2.42, 2.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 130002 115098 88.5%
Ests est.fasta 109175560 108175218 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1655 1398
transcript 1345 1123
exon 288 174
intron 86 72
description:
protein length (aa) 385 307
exons per gene 4.67 4
# of gene models 12396


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.