Status
(May 2016) The Symbiochloris reticulata Spain genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI AnnotationPipeline.
Summary statistics for the Symbiochloris reticulata Spain
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 58.32 |
| Sequencing read coverage depth | 128x |
| # of contigs | 3532 |
| # of scaffolds | 3403 |
| # of scaffolds >= 2Kbp | 2622 |
| Scaffold N50 | 473 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 129 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.21, 0.18, 0.17 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 139268010 | 128819461 | 92.5% |
| Other | JGI_RNA_contigs | 102102 | 57564 | 56.4% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 2732 | 2094 |
| transcript | 1308 | 1105 |
| exon | 203 | 159 |
| intron | 264 | 248 |
| description: | ||
| protein length (aa) | 357 | 282 |
| exons per gene | 6.44 | 5 |
| # of gene models | 12582 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
