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Info • Dichotomocladium robustum RSA 2353+ v1.0

Status

[July 2019] The Dichotomocladium robustum RSA 2353+ v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dichotomocladium robustum RSA 2353 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.62
Sequencing read coverage depth 158.91x
# of contigs 202
# of scaffolds 202
# of scaffolds >= 2Kbp 197
Scaffold N50 23
Scaffold L50 (Mbp) 0.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.57, 1.35, 1.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54579 49698 91.1%
Ests est.fasta 90659225 89326762 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1810 1581
transcript 1460 1257
exon 292 178
intron 89 76
description:
protein length (aa) 419 347
exons per gene 5.01 4
# of gene models 12069


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.