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Info • Dichomitus squalens LYAD-421 SS1 v1.0

Status

Summary statistics for the Dichomitus squalens (P. Karst.) D.A. Reid v1.0 release are below. The genome has been sequenced using Roche (454) and Illumina data.
Genome Assembly
Genome Assembly size (Mbp} 42.75
Sequencing read coverage depth 50.63
# of contigs 2852
# of scaffolds 542
# of scaffolds >= 2Kbp 542
Scaffold N50 16
Scaffold L50 (Mbp) 0.64
# of gaps 1155
% of scaffold length in gaps 7.7%
Three largest Scaffolds (Mbp) 3.41, 2.23, 2.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs_avicel_media 1519106 1455550 95.8%
Ests ESTs_full_media_A 935727 908605 97.1%
Other Clusters 16501 15370 93.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1890 1562
transcript 1484 1213
exon 254 152
intron 86 61
description:
protein length (aa) 419 345
exons per gene 5.84 5
# of gene models 12290


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.