Info • Dichomitus squalens CBS463.89 v1.0

Status

The Dichomitus squalens CBS463.89 genome was sequenced using Illumina technology and assembled with Velvet and AllPathsLG.

Summary statistics for the Dichomitus squalens CBS463.89 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.87
Sequencing read coverage depth 145x
# of contigs 1373
# of scaffolds 1259
# of scaffolds >= 2Kbp 1023
Scaffold N50 134
Scaffold L50 (Mbp) 0.08
# of gaps 114
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.79, 0.33, 0.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49515 46984 94.9%
Ests est.fasta 138083152 134265720 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1691 1437
transcript 1370 1140
exon 259 158
intron 76 61
description:
protein length (aa) 387 314
exons per gene 5.30 4
# of gene models 14946


Collaborators

Ronald P. de Vries, CBS-KNAW Fungal Biodiversity Centre

Miia Mäkelä and Kristiina Hildén from University of Helsinki

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Casado López S, Peng M, Daly P, Andreopoulos B, Pangilinan J, Lipzen A, Riley R, Ahrendt S, Ng V, Barry K, Daum C, Grigoriev IV, Hildén KS, Mäkelä MR, de Vries RP
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.
Microbiol Resour Announc. 2019 May 2;8(18):. doi: 10.1128/MRA.00264-19

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.