Info • Dichomitus squalens CBS464.89 v1.0

Status

(Dec 2015) The Dichomitus squalens CBS464.89 genome was sequenced using Illumina technology and assembled with AllPathsLG.

Summary statistics for the Dichomitus squalens CBS464.89 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.60
Sequencing read coverage depth 93x
# of contigs 1147
# of scaffolds 467
# of scaffolds >= 2Kbp 400
Scaffold N50 44
Scaffold L50 (Mbp) 0.22
# of gaps 680
% of scaffold length in gaps 2.5%
Three largest Scaffolds (Mbp) 2.37, 1.43, 0.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48123 46125 95.8%
Ests est.fasta 124947952 121557046 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1678 1425
transcript 1358 1128
exon 259 158
intron 77 60
description:
protein length (aa) 382 311
exons per gene 5.25 4
# of gene models 15295


Collaborators

Ronald P. de Vries, CBS-KNAW Fungal Biodiversity Centre

Miia Mäkelä and Kristiina Hildén from University of Helsinki

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.