Info • Didymella exigua CBS 183.55 v1.0

Status

Assembly v1 (July 2012) is a draft assembly of Solexa gDNA reads. A total of 176 scaffolds and 34.4 Mbp were assembled using AllPathsLG.

Summary statistics for the Didymella exigua CBS 183.55 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 34.39
Sequencing read coverage depth 82.1x
# of contigs 1010
# of scaffolds 176
# of scaffolds >= 2Kbp 140
Scaffold N50 15
Scaffold L50 (Mbp) 0.84
# of gaps 834
% of scaffold length in gaps 2.1%
Three largest Scaffolds (Mbp) 1.70, 1.69, 1.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Combest_RNA_contigs 77186 65293 84.6%
Other JGI_Rnnotator_RNA_contigs 27964 26286 94.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1614 1371
transcript 1475 1248
exon 601 381
intron 98 54
description:
protein length (aa) 424 350
exons per gene 2.46 2
# of gene models 12394


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.