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Info • Didymocrea sadasivanii CBS 438.65 v1.0

Status

[April 2017] The Didymocrea sadasivanii CBS 438.65 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Didymocrea sadasivanii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.14
Sequencing read coverage depth 77.49x
# of contigs 809
# of scaffolds 809
# of scaffolds >= 2Kbp 777
Scaffold N50 88
Scaffold L50 (Mbp) 0.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.62, 0.51, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35705 31317 87.7%
Ests est.fasta 147356976 143496081 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1602 1369
transcript 1430 1212
exon 473 302
intron 87 56
description:
protein length (aa) 419 342
exons per gene 3.02 3
# of gene models 13361


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.