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Info • Dimargaris cristalligena RSA 468 single-cell v1.0

Status

[Feb 2016] The assembly is a pooled collection of reads from 7 Illumina HiSeq single-cell libraries assembled together using Spades (v3.6.0). This annotation uses only scaffolds > 2k.

Summary statistics for the Dimargaris cristalligena v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.78
Sequencing read coverage depth 1.0x
# of contigs 2254
# of scaffolds 2235
# of scaffolds >= 2Kbp 2235
Scaffold N50 397
Scaffold L50 (Mbp) 0.02
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.11, 0.11, 0.09


Gene Models FilteredModels1
length (bp) of: average median
gene 1483 1233
transcript 1136 906
exon 456 222
intron 234 199
description:
protein length (aa) 379 302
exons per gene 2.49 2
# of gene models 7456


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.