The genome of Dioszegia hungarica PDD-24b-2 was provided by Françoise Bringel. The JGI Fungal Annotation pipeline was used to predict genes and provide functional annotation.
The study of microbial metabolism on atmospheric chemistry has revealed that microorganisms may play a central role in carbon metabolism at night, whereas during the day, photochemistry is dominant (Vaïtilingom et al. 2010, 2013). Air-borne microbes are both a source (immigration) and a sink (emigration) for populations of the phyllosphere (aerial parts of plants) (Kinkel 1997). One representative member of the cloud microbiota, Dioszegia hungarica strain PDD-24b-2, has been isolated from cloud water collected at the summit of the puy-du-Dôme in France (Vaïtilingom et al. 2012). This widespread fungal taxon is found in various cold environments, such as snow and glacial meltwater rivers (de García et al. 2007), and associated with plants of Antarctica (Ferreira et al. 2019). It is also part of the core fungal community of the wheat phyllosphere (Karlsson et al. 2017; Sapkota et al. 2017). D. hungarica has also been identified as one of the few ‘microbial hub taxon’ that links plant host and abiotic factors to plant microbiome variation (Agler et al. 2016).
Therefore, examining its genome will contribute to better understanding of the dynamics of fungal diversity found in climate change-relevant ecosystems (e.g. clouds, cold environments). D. hungarica PDD-24b-2 entire genome (17 chromosomes) and mitochondrial genome have been sequenced.
References:
- Agler et al. (2016) Microbial hub taxa link host and abiotic factors to plant microbiome variation. PLoS Biol. 14(1):e1002352. doi: 10.1371/journal.pbio.1002352.
- de García et al. (2007) Biodiversity of cold-adapted yeasts from glacial meltwater rivers in Patagonia, Argentina. FEMS Microbiol Ecol. 59(2):331-41. doi: 10.1111/j.1574-6941.2006.00239.x.
- Ferreira et al. (2019) Taxonomy and richness of yeasts associated with angiosperms, bryophytes, and meltwater biofilms collected in the Antarctic Peninsula. Extremophiles. 23(1):151-159. doi: 10.1007/s00792-018-1069-9.
- Karlsson et al. (2017) Organic farming increases richness of fungal taxa in the wheat phyllosphere. Mol Ecol. 26(13):3424-3436. doi: 10.1111/mec.14132
- Kinkel (1997) Microbial population dynamics on leaves. Annu Rev Phytopathol.35:327-47. doi: 10.1146/Annu Rev Phyto.35.1.327.
- Sapkota et al. (2017) Spatiotemporal variation and networks in the mycobiome of the wheat canopy. Front Plant Sci. 8:1357. doi: 10.3389/fpls.2017.01357.
- Vaïtilingom et al. (2010) Contribution of microbial activity to carbon chemistry in clouds. Appl Environ Microbiol. 76(1):23-9. doi: 10.1128/AEM.01127-09
- Vaïtilingom et al. (2012). Long-term features of cloud microbiology at the puy de Dôme (France). Atmos Environ. 56:88–100.
- Vaïtilingom et al. (2013) Potential impact of microbial activity on the oxidant capacity and organic carbon budget in clouds. Proc Natl Acad Sci U S A. 110(2):559-64. doi: 10.1073/pnas.1205743110
Genome Reference(s)
Jarrige D, Haridas S, Bleykasten-Grosshans C, Joly M, Nadalig T, Sancelme M, Vuilleumier S, Grigoriev IV, Amato P, Bringel F
High quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water.
G3 (Bethesda). 2022 Oct 19;():. doi: 10.1093/g3journal/jkac282