Info • Diplogelasinospora inaequalis CBS 436.74 v1.0

Status

[April 2023] The Diplogelasinospora inaequalis CBS 436.74 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 51.15
Sequencing read coverage depth 129.89x
# of contigs 1077
# of scaffolds 1014
# of scaffolds >= 2Kbp 910
Scaffold N50 81
Scaffold L50 (Mbp) 0.15
# of gaps 63
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.32, 0.87, 0.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53397 50482 94.5%
Ests est.fasta 215789685 213882011 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1832 1595
transcript 1650 1419
exon 575 354
intron 99 66
description:
protein length (aa) 462 376
exons per gene 2.87 2
# of gene models 13395


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.