Info • Dipodascopsis tothii CBS 759.85 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 13.13
Sequencing read coverage depth 441.8x
# of contigs 98
# of scaffolds 83
# of scaffolds >= 2Kbp 82
Scaffold N50 14
Scaffold L50 (Mbp) 0.34
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.73, 0.64, 0.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 23866 22951 96.2%
Ests est.fasta 124235195 122856245 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1703 1450
transcript 1595 1358
exon 652 342
intron 76 35
description:
protein length (aa) 459 376
exons per gene 2.45 2
# of gene models 5632


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.