Info • Dipodascopsis uninucleata Phaff 50-6 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 16.24
Sequencing read coverage depth 394.07x
# of contigs 45
# of scaffolds 37
# of scaffolds >= 2Kbp 28
Scaffold N50 6
Scaffold L50 (Mbp) 1.23
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.86, 1.73, 1.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 24027 22955 95.5%
Ests est.fasta 121812832 121142965 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1872 1655
transcript 1711 1484
exon 646 320
intron 100 76
description:
protein length (aa) 475 401
exons per gene 2.65 2
# of gene models 6018


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.