Info • Dissophora ornata CBS 347.77 v1.0

Status

[August 2018] The Dissophora ornata CBS 347.77 genome was sequenced with Illumina, assembled with AllPathLG version R49403, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dissophora ornata CBS 347.77 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.94
Sequencing read coverage depth 144.3x
# of contigs 2933
# of scaffolds 2577
# of scaffolds >= 2Kbp 2098
Scaffold N50 344
Scaffold L50 (Mbp) 0.03
# of gaps 356
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 0.16, 0.15, 0.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42215 36597 86.7%
Ests est.fasta 94846227 90718714 95.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1972 1692
transcript 1596 1324
exon 436 249
intron 143 107
description:
protein length (aa) 462 370
exons per gene 3.66 3
# of gene models 12584


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.