Info • Dothideomycetes sp. P12C66 v1.0

Status

[December 2020] The Dothideomycetes sp. P12C66 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dothideomycetes sp. P12C66 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.27
Sequencing read coverage depth 43.82x
# of contigs 18
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 7
Scaffold L50 (Mbp) 2.66
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.66, 3.85, 3.42


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39008 37209 95.4%
Ests est.fasta 168526121 167327135 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1784 1573
transcript 1626 1422
exon 535 342
intron 79 57
description:
protein length (aa) 455 379
exons per gene 3.04 3
# of gene models 14073


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.