Info • Dothidotthia symphoricarpi v1.0


[December 2013] The Dothidotthia symphoricarpi genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
A 14.2 Kb mitochondrial genome was assembled separately and is available in the download section.

Summary statistics for the Dothidotthia symphoricarpi CBS 119687 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.43
Sequencing read coverage depth 93.4x
# of contigs 268
# of scaffolds 59
# of scaffolds >= 2Kbp 48
Scaffold N50 11
Scaffold L50 (Mbp) 1.36
# of gaps 209
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 2.00, 1.95, 1.75

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 29133 25119 86.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1702 1452
transcript 1554 1329
exon 575 360
intron 88 56
protein length (aa) 451 373
exons per gene 2.71 2
# of gene models 11790


Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.