Info • Durotheca rogersii YMJ 92031201 v1.0

Status

[December 2019] The Durotheca rogersii YMJ 92031201 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Durotheca rogersii YMJ 92031201 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.18
Sequencing read coverage depth 689.71x
# of contigs 155
# of scaffolds 155
# of scaffolds >= 2Kbp 155
Scaffold N50 12
Scaffold L50 (Mbp) 0.95
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.32, 3.05, 3.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57208 55641 97.3%
Ests est.fasta 152395542 151239243 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2011 1776
transcript 1812 1584
exon 624 391
intron 106 75
description:
protein length (aa) 472 390
exons per gene 2.91 2
# of gene models 10535


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.