Info • Earliella scabrosa CIRM-BRFM 1817 v1.0

Status

[November 2017] The Earliella scabrosa CIRM-BRFM 1817 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Earliella scabrosa CIRM-BRFM 1817 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.67
Sequencing read coverage depth 109.56x
# of contigs 50
# of scaffolds 50
# of scaffolds >= 2Kbp 49
Scaffold N50 9
Scaffold L50 (Mbp) 1.97
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.43, 3.67, 3.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 70122 68947 98.3%
Ests est.fasta 103056539 102689460 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1771 1546
transcript 1426 1241
exon 251 152
intron 76 60
description:
protein length (aa) 421 350
exons per gene 5.68 4
# of gene models 17744


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.