Status
[September 2018] The Echinodontium tinctorium Aho-80 genome was sequenced with Illumina, improved by gap closing with PacBio and PBJelly, and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.
Summary statistics for the Echinodontium tinctorium Aho-80
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.41 |
| Sequencing read coverage depth | 81.7x |
| # of contigs | 1378 |
| # of scaffolds | 984 |
| # of scaffolds >= 2Kbp | 735 |
| Scaffold N50 | 56 |
| Scaffold L50 (Mbp) | 0.18 |
| # of gaps | 394 |
| % of scaffold length in gaps | 1.4% |
| Three largest Scaffolds (Mbp) | 1.05, 0.97, 0.97 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 56166 | 41892 | 74.6% |
| Ests | est.fasta | 144297975 | 132486513 | 91.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1882 | 1639 |
| transcript | 1524 | 1321 |
| exon | 238 | 149 |
| intron | 68 | 58 |
| description: | ||
| protein length (aa) | 441 | 366 |
| exons per gene | 6.41 | 5 |
| # of gene models | 12508 |
Collaborators
- Jon Magnuson, Pacific Northwest National Laboratory, WA, USA
- Daniel Lindner, US Forest Service Northern Research Station, WI, USA
- Joseph Spatafora, Oregon State University, OR, USA
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Russulales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
