Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Ellisomyces anomalus CBS 243.57 v1.0
Please note that this organism is for archival use only. Please see the current Ellisomyces anomalus CBS 243.57 v2.0 site for the latest data and information.

Status

[April 2019] The Ellisomyces anomalus CBS 243.57 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section

Summary statistics for the Ellisomyces anomalus CBS 243.57 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.55
Sequencing read coverage depth 259.03x
# of contigs 66
# of scaffolds 66
# of scaffolds >= 2Kbp 66
Scaffold N50 8
Scaffold L50 (Mbp) 1.97
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.74, 2.52, 2.47


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41100 36372 88.5%
Ests est.fasta 307587909 296395800 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1638 1402
transcript 1427 1206
exon 361 212
intron 73 61
description:
protein length (aa) 420 343
exons per gene 3.96 3
# of gene models 12178


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.