Info • Aporpium caryae L-13461


Assembly v1 (Sep 2014) is a draft assembly of Illumina and PacBio reads using PBJelly.

Summary statistics for the Aporpium caryae L-13461 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.53
Sequencing read coverage depth 26x
# of contigs 731
# of scaffolds 533
# of scaffolds >= 2Kbp 428
Scaffold N50 32
Scaffold L50 (Mbp) 0.34
# of gaps 198
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 1.26, 1.19, 1.18

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 31511 30490 96.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1640 1399
transcript 1375 1174
exon 261 158
intron 64 54
protein length (aa) 399 327
exons per gene 5.28 4
# of gene models 16571


Daniel L. Lindner, US Forest Service, Northern Research Station, Center for Forest Mycology Research

Joseph Spatafora, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.