Status
Assembly v1 (Sep 2014) is a draft assembly of Illumina and PacBio reads using PBJelly.
Summary statistics for the Aporpium caryae L-13461 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.53 |
| Sequencing read coverage depth | 26x |
| # of contigs | 731 |
| # of scaffolds | 533 |
| # of scaffolds >= 2Kbp | 428 |
| Scaffold N50 | 32 |
| Scaffold L50 (Mbp) | 0.34 |
| # of gaps | 198 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 1.26, 1.19, 1.18 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 31511 | 30490 | 96.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1640 | 1399 |
| transcript | 1375 | 1174 |
| exon | 261 | 158 |
| intron | 64 | 54 |
| description: | ||
| protein length (aa) | 399 | 327 |
| exons per gene | 5.28 | 4 |
| # of gene models | 16571 |
Collaborators
Daniel L. Lindner, US Forest Service, Northern Research Station, Center for Forest Mycology Research
Joseph Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
