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Info • Elsinoe ampelina CECT 20119 v1.0

Status

Assembly v1.0 (November 2015) . Elsinoe ampelina CECT 20119 genome was sequenced using Illumina HiSeq platform and assembled with AllPathsLG to produce a main assembly with 161 scaffolds and 28.27 Mb. ESTs were assembled using Trinity.

Summary statistics for the Elsinoe ampelina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.27
Sequencing read coverage depth 100.2x
# of contigs 503
# of scaffolds 161
# of scaffolds >= 2Kbp 125
Scaffold N50 7
Scaffold L50 (Mbp) 1.53
# of gaps 342
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 3.31, 2.76, 2.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 94912225 92254222 97.2%
Other Assembled_EST_contigs 20375 19809 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1693 1467
transcript 1594 1373
exon 676 416
intron 75 53
description:
protein length (aa) 451 373
exons per gene 2.36 2
# of gene models 10209


Collaborators

Joseph Spataphora, Oregon State University    

Lucía Ramírez, Public Universiy of Navarre    

Antonio G. Pisabarro, Public Universiy of Navarre   

Manuel Alfaro, Public University of Navarre   
 
Raúl Castanera, Public University of Navarre   

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.