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Info • Elytroderma deformans CBS183.68 v1.0

Status

[November 2018] The Elytroderma deformans CBS183.68 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Elytroderma deformans v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.48
Sequencing read coverage depth 92.96x
# of contigs 353
# of scaffolds 353
# of scaffolds >= 2Kbp 346
Scaffold N50 33
Scaffold L50 (Mbp) 0.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.71, 1.29, 1.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46500 42731 91.9%
Ests est.fasta 137405709 135381021 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1855 1625
transcript 1657 1440
exon 511 316
intron 91 60
description:
protein length (aa) 473 393
exons per gene 3.24 3
# of gene models 12886


Collaborators

Richard Hamelin, University of British Columbia

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.