Status
v.1.0 (April 25, 2008): The assembly release version 1.0 of whole genome shotgun reads was constructed with Arachne, using paired end sequencing reads at an average coverage of ~10.0X. After trimming for vector and quality, 2991780 reads assembled into 7809 main genome scaffolds totaling 167.7 MB. Roughly half of the genome is contained in 109 scaffolds all at least 0.4 MB in length.
The current draft release, version 1.0, includes a total of 39126 gene models predicted and functionally annotated using the JGI annotation pipeline.
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV
Pan genome of the phytoplankton Emiliania underpins its global distribution.
Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV
Pan genome of the phytoplankton Emiliania underpins its global distribution.
Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221
Links
- Emiliania huxleyi Genome Project at California State U San Marcos
- Emiliania huxleyi virus 86 at Wellcome Trust Sanger Institute
- Bioinformatics & Evolutionary Genomics at U Ghent
- Biodiversity of Open Ocean Microcalcifiers at Station Biologique de Roscoff
- Emiliania huxleyi Home Page at National Oceanography Centre, Southampton
Funding
This work was performed under the auspices of the US Department
of Energy's Office of Science, Biological and Environmental
Research Program, and by the University of California, Lawrence
Berkeley National Laboratory under contract No. DE-AC02-05CH11231,
Lawrence Livermore National Laboratory under Contract No.
DE-AC52-07NA27344, and Los Alamos National Laboratory under
contract No. DE-AC02-06NA25396.
