Info • Encephalitozoon cuniculi GB-M1

Status

This genome was sequenced by Genoscope. Please check their data use policies.

Summary statistics for the Encephalitozoon cuniculi GB-M1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 2.50
Sequencing read coverage depth Finished
# of contigs 12
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 6
Scaffold L50 (Mbp) 0.22
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.27, 0.26, 0.25


Gene Models GenoscopeModels
length (bp) of: average median
gene 1081 852
transcript 1080 852
exon 1072 846
intron 38 35
description:
protein length (aa) 360 284
exons per gene 1.01 1
# of gene models 1996


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Peyretaillade E, Gonçalves O, Terrat S, Dugat-Bony E, Wincker P, Cornman RS, Evans JD, Delbac F, Peyret P
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation.
BMC Genomics. 2009 Dec 15;10():607. doi: 10.1186/1471-2164-10-607

Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, Delbac F, El Alaoui H, Peyret P, Saurin W, Gouy M, Weissenbach J, Vivarès CP
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.
Nature. 2001 Nov 22;414(6862):450-3. doi: 10.1038/35106579

Funding

This project was not sequenced at the JGI.