Status
This genome was sequenced by Nicolas Corradi, Jean-François Pomber and Laurent Farinelli et al. in Department of Botany, Canadian Institute for Advanced Research, University of British Columbia, 3529-6270 University Boulevard, Vancouver, British Columbia, Canada V6T 1Z4 (The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis). Please check their data use policies.
Summary statistics for the Encephalitozoon intestinalis
ATCC 50506 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 2.22 |
| Sequencing read coverage depth | 40x |
| # of contigs | 12 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 1 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.24, 0.23, 0.23 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1072 | 846 |
| transcript | 1072 | 846 |
| exon | 1063 | 837 |
| intron | 33 | 32 |
| description: | ||
| protein length (aa) | 357 | 282 |
| exons per gene | 1.01 | 1 |
| # of gene models | 1833 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ
The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis.
Nat Commun. 2010 Sep 21;1():77. doi: 10.1038/ncomms1082
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ
The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis.
Nat Commun. 2010 Sep 21;1():77. doi: 10.1038/ncomms1082
Funding
This project was not sequenced at the JGI.
