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Info • Enterocytozoon bieneusi H348


This genome was sequenced by Donna E. Akiyoshi et al. in Division of Infectious Diseases, Department of Biomedical Sciences, Tufts Cummings School of Veterinary Medicine, North Grafton, Massachusetts, United States of America (Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi). Please check their data use policies.

The genome was assembled from a combination of Illumina/Solexa and 454 reads. Gene models were predicted de novo based on homology and evidence from the RNA-seq data. 

Summary statistics for the Enterocytozoon bieneusi H348 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 3.86
Sequencing read coverage depth 4x
# of contigs 1743
# of scaffolds 1733
# of scaffolds >= 2Kbp 129
Scaffold N50 136
Scaffold L50 (Mbp) 0.00
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.20, 0.13, 0.13

Gene Models ExternalModels
length (bp) of: average median
gene 719 585
transcript 719 585
exon 719 585
intron n/a 0
protein length (aa) 240 195
exons per gene 1.00 1
# of gene models 3632

Genome Reference(s)


This project was not sequenced at the JGI.