Info • Entoloma gasteromycetoides TAS9 v1.0


[May 2023] The Entoloma gasteromycetoides TAS9 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

This genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Some of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Genome Assembly
Genome Assembly size (Mbp) 127.76
Sequencing read coverage depth 24.24x
# of contigs 387
# of scaffolds 387
# of scaffolds >= 2Kbp 387
Scaffold N50 52
Scaffold L50 (Mbp) 0.77
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.32, 2.24, 2.11

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 110948 89604 80.8%
Ests est.fasta 131122173 127631020 97.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1839 1556
transcript 1485 1242
exon 245 151
intron 72 58
protein length (aa) 427 341
exons per gene 6.06 5
# of gene models 17137


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.