Info • Entophlyctis helioformis JEL805 v1.0

Status

[December 2016] The Entophlyctis helioformis JEL805 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Entophlyctis helioformis JEL805 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.92
Sequencing read coverage depth 53.07x
# of contigs 792
# of scaffolds 792
# of scaffolds >= 2Kbp 707
Scaffold N50 89
Scaffold L50 (Mbp) 0.10
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.45, 0.33, 0.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38640 29862 77.3%
Ests est.fasta 143074437 135437345 94.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1911 1545
transcript 1541 1231
exon 340 194
intron 106 86
description:
protein length (aa) 461 353
exons per gene 4.54 3
# of gene models 10118


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.