Info • Entoleuca mammata CFL468 v1.0


[November 2016] The Entoleuca mammata CFL468 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Entoleuca mammata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.20
Sequencing read coverage depth 81.62x
# of contigs 203
# of scaffolds 203
# of scaffolds >= 2Kbp 201
Scaffold N50 30
Scaffold L50 (Mbp) 0.48
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.26, 1.19, 1.15

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47565 46447 97.6%
Ests est.fasta 87297002 86343159 98.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1726 1514
transcript 1531 1308
exon 518 317
intron 102 73
protein length (aa) 439 360
exons per gene 2.96 2
# of gene models 11498


Richard Hamelin, University of British Columbia

Philippe Tanguay and Marie-Josée Bergeron, Canadian Forest Service, Laurentian Forestry Centre.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.