Info • Epithele typhae CBS 203.58 v1.0

Status

[August 2018] [Aug 2018] The Epithele typhae CBS 203.58 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Epithele typhae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.14
Sequencing read coverage depth 84.64x
# of contigs 769
# of scaffolds 769
# of scaffolds >= 2Kbp 758
Scaffold N50 45
Scaffold L50 (Mbp) 0.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.89, 1.77, 1.65


Gene Models FilteredModels1
length (bp) of: average median
gene 1756 1499
transcript 1332 1107
exon 216 137
intron 84 59
description:
protein length (aa) 444 369
exons per gene 6.16 5
# of gene models 13759


Collaborators



Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.