Status
The genome sequence and gene models of Eremothecium gossypii FDAG1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Eremothecium gossypii FDAG1
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 9.13 |
| Sequencing read coverage depth | |
| # of contigs | 7 |
| # of scaffolds | 7 |
| # of scaffolds >= 2Kbp | 7 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 1.53 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.84, 1.82, 1.53 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1478 | 1224 |
| transcript | 1472 | 1221 |
| exon | 1391 | 1152 |
| intron | 104 | 63 |
| description: | ||
| protein length (aa) | 490 | 407 |
| exons per gene | 1.06 | 1 |
| # of gene models | 4766 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Dietrich FS, Voegeli S, Kuo S, Philippsen P
Genomes of Ashbya fungi isolated from insects reveal four mating-type loci, numerous translocations, lack of transposons, and distinct gene duplications.
G3 (Bethesda). 2013 Aug 7;3(8):1225-39. doi: 10.1534/g3.112.002881
Dietrich FS, Voegeli S, Kuo S, Philippsen P
Genomes of Ashbya fungi isolated from insects reveal four mating-type loci, numerous translocations, lack of transposons, and distinct gene duplications.
G3 (Bethesda). 2013 Aug 7;3(8):1225-39. doi: 10.1534/g3.112.002881
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae
Funding
This project was not sequenced at the JGI.
