Status
[Dec 2014] The Erythrobasidium hasegawianum genome was
sequenced using the Illumina platform and assembled with AllPathsLG
release version R49403 (Gnerre
et al., 2010).
The assembly is probably diploid, but the two genomes are
sufficiently diverged that we were unable to merge them into a
haploid assembly. Since the two alleles differ significantly, both
datasets are available for download. The default annotation
download files are the 'haploid', and the 'diploid' files are
clearly marked.
In the genome browser, the haploid set is marked as
'FilteredModels2'. The diploid set is available as the
'FilteredModels1' track. The 'GeneCatalog' is a snapshot of the
best models and therefore starts as a copy of 'FilteredModels2'.
Users with sufficient privileges can add and remove models from
this track.
Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.69 |
| Sequencing read coverage depth | 155.3x |
| # of contigs | 265 |
| # of scaffolds | 158 |
| # of scaffolds >= 2Kbp | 130 |
| Scaffold N50 | 17 |
| Scaffold L50 (Mbp) | 0.78 |
| # of gaps | 107 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 2.63, 1.75, 1.67 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 44777 | 44139 | 98.6% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1827 | 1556 |
| transcript | 1555 | 1310 |
| exon | 297 | 181 |
| intron | 66 | 61 |
| description: | ||
| protein length (aa) | 440 | 354 |
| exons per gene | 5.23 | 4 |
| # of gene models | 9521 |
Collaborators
Mary Catherine Aime, Purdue University, USA
Joseph Spatafora, Oregon State University, USA
