Info • Escovopsis weberi CC031208-10


The genome sequence and gene models of Escovopsis weberi CC031208-10 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Jan 29, 2020 and annotation provided by the authors. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 116 models from E. weberi and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Escovopsis weberi release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.13
Sequencing read coverage depth 44x
# of contigs 747
# of scaffolds 28
# of scaffolds >= 2Kbp 28
Scaffold N50 4
Scaffold L50 (Mbp) 2.58
# of gaps 719
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 5.72, 3.83, 3.71

Gene Models FilteredModels1
length (bp) of: average median
gene 1634 1397
transcript 1418 1203
exon 516 268
intron 125 96
protein length (aa) 473 401
exons per gene 2.75 2
# of gene models 6754


Irina Druzhinina, Nanjing Agricultural University, Jiangsu, PRC.

Genome Reference(s)


This project was not sequenced at the JGI.