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Info • Eurotium rubrum v1.0

Status

The Eurotium rubrum genome was sequenced using the Illumina platform and assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses

Summary statistics for the Eurotium rubrum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 26.21
Sequencing read coverage depth 91.7
# of contigs 371
# of scaffolds 110
# of scaffolds >= 2Kbp 96
Scaffold N50 14
Scaffold L50 (Mbp) 0.62
# of gaps 261
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 1.56, 1.54, 1.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
RNAseq contigs RNAseq contigs 30179 28649 94.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1719 1479
transcript 1557 1340
exon 507 294
intron 81 59
description:
protein length (aa) 457 381
exons per gene 3.07 3
# of gene models 10076


Collaborators

Igor Grigorev, DOE-Joint Genome Institute

Eviatar Nevo, University of Haifa, Israel

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.