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Info • Eurotiomycetes sp. JF 03-4F Slimy v1.0

Status

[August 2018] (July 2018) The Eurotiomycetes sp. JF 03-4F genome was sequenced with Illumina, assembled with AllpathsLG, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in Download.

Summary statistics for the Eurotiomycetes sp. JF 03-4F Slimey v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.23
Sequencing read coverage depth 147.8x
# of contigs 27
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 5
Scaffold L50 (Mbp) 2.89
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.57, 3.58, 2.93


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30951 28041 90.6%
Ests est.fasta 74407817 72280288 97.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1844 1671
transcript 1746 1574
exon 707 414
intron 69 56
description:
protein length (aa) 489 430
exons per gene 2.47 2
# of gene models 11358


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.