Info • Exophiala sp. JF 06-1F Fuzzy v1.0


[January 2021] The Exophiala sp. JF 06-1F v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

The RNA sample was contaminated with other organisms, resulting in low RNA mapping rates.

Summary statistics for the Exophiala sp. JF 06-1F v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.37
Sequencing read coverage depth 166.075269891x
# of contigs 212
# of scaffolds 194
# of scaffolds >= 2Kbp 158
Scaffold N50 12
Scaffold L50 (Mbp) 0.97
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.23, 2.20, 1.98

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 105759 33844 32.0%
Ests est.fasta 191429908 166697919 87.1%

Gene Models FilteredModels1
length (bp) of: average median
gene 1803 1664
transcript 1680 1537
exon 634 374
intron 77 61
protein length (aa) 474 425
exons per gene 2.65 2
# of gene models 13998


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.