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Info • Exophiala alcalophila ATCC 48519 v1.0

Status

[June 2016] The Exophiala alcalophila ATCC 48519 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Exophiala alcalophila ATCC 48519 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.81
Sequencing read coverage depth 114x
# of contigs 82
# of scaffolds 51
# of scaffolds >= 2Kbp 47
Scaffold N50 9
Scaffold L50 (Mbp) 1.17
# of gaps 31
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.27, 2.19, 1.93


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 239845943 238696390 99.5%
Ests Trinity_assembled_Illumina_ESTs 26014 25666 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1714 1529
transcript 1600 1422
exon 651 385
intron 81 62
description:
protein length (aa) 468 407
exons per gene 2.46 2
# of gene models 12077


Collaborators

John Gladden, Joint Bioenergy Institute (JBEI)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.